MK002172 ESSR-067 | CarrotOmics

Resource Type:

Genetic Marker

Name:

MK002172 ESSR-067

Identifier:

MK002172_ESSR_067

Organism:

Daucus carota subspecies sativus

Marker Type:

SSR

Publication:

Salgon Sylvia. Phenotyping and pigment analysis in carrot (Daucus carota L.) and genetic mapping with SSR markers and candidate genes. M.S. Thesis. 2011. Ministère de l'Agriculture Montpellier
Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.

Relationship:

There are 5 relationships.
Relationships
The genetic_marker, MK002172 ESSR-067, is adjacent to primer, ESSR-067-F.
The genetic_marker, MK002172 ESSR-067, is adjacent to primer, ESSR-067-R.
The genetic_marker, MK002172 ESSR-067, is located in gene, DCAR_030472.
The genetic_marker, MK002172 ESSR-067, is located in gene, LOC108203049.
The marker_locus, ESSR-067, is an instance of genetic_marker, MK002172 ESSR-067.

MapViewer Marker Map Positions:


Map Name	Linkage Group	Position	Locus	MapViewer
2016 70796 NG full map	Chr9	42.681	ESSR-067	MapViewer
2011 SS1061QTL	1061QTL-6	0	ESSR-067	MapViewer
2016 70796 NG bin map	Chr9	42.681	ESSR-067	MapViewer
2013 Criolla×Bienal	9	31.1	ESSR-067	MapViewer
2011 SS1061	1061-9	35.435	ESSR-067	MapViewer
2016 Integ NG full map	CH9	38.285	ESSR-067	MapViewer
2016 Integ NG bin map	CH9	40.609	ESSR-067	MapViewer

Synonyms:

MK002172

Sequence Coordinates:

DCARv2_Chr9:25750680..25750968+

View location in JBrowse:

DCARv2_Chr9:25750680..25750968+

Sequence:

TCACTTCAAGAACCCAAGGCTTCAGCTGAGGCATTCAGTGAAGAAAAAGA
TGAGTTCAGTGAAGAGATCAGAGCTAGTAGACAGTCTCTAGAGGAGCTTC
TTGTTGTTAGAAGGCCAGTAATGGATTCATTAGTTGAAGATGATGAGGAT
GATGATGAGGAGGAGGAGGAGGGCTTGTCTTCTGTTGATGCAAGTCTTGC
AAAATTTGCAAAAAAAGTGGCTTTTTTTGAACCTGAGAGAGTTGAGTCCA
GGGAG

Sequences:

Primary genetic marker Sequence (255bp)

>MK002172_ESSR_067 ID=MK002172_ESSR_067; Name=MK002172 ESSR-067; organism=Daucus carota; type=genetic_marker
TCACTTCAAGAACCCAAGGCTTCAGCTGAGGCATTCAGTGAAGAAAAAGA
TGAGTTCAGTGAAGAGATCAGAGCTAGTAGACAGTCTCTAGAGGAGCTTC
TTGTTGTTAGAAGGCCAGTAATGGATTCATTAGTTGAAGATGATGAGGAT
GATGATGAGGAGGAGGAGGAGGGCTTGTCTTCTGTTGATGCAAGTCTTGC
AAAATTTGCAAAAAAAGTGGCTTTTTTTGAACCTGAGAGAGTTGAGTCCA
GGGAG

This is the primary representative sequence for this feature.

Sequence Length:

255