DCAR_027770 | CarrotOmics

Resource Type:

Gene

Organism:

Daucus carota subspecies sativus

Name:

DCAR_027770

Identifier:

DCAR_027770.gene

Locus Tag:

DCAR_027770

Publication:

Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.

Relationship:

There are 3 relationships.
Relationships
The mRNA, DCAR_027770, is a part of gene, DCAR_027770.
The genetic_marker, MK007914 TP133025, is located in gene, DCAR_027770.
The genetic_marker, MK004395 K1839, is located in gene, DCAR_027770.

Analysis:


Name	Description
Carrot Genome Assembly DCARv2	An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below. These sequences can be viewed in JBrowse here. Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search
DCAR V1.0 Gene Prediction	For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here.

Transcripts:


Transcript Name	Identifier	Type	Location
DCAR_027770	DCAR_027770.mRNA	mRNA	DCARv2_Chr8:19538508..19548761

Sequence:

ATGGATTATGATGACAAAATTTCTGAAGGCCATAAGTCAGCTAATGCAGA
GAATTCCAAGTCATCACCCGTGGTGCCTCCATTTGCTCTTCCCAAGTATG
ATTTTGATGATAGCCTACAGGGTGACCTAAGATTTGAAGGATTGGTCGAA
AATGAAGTTTTTCTTGGCATTTCGAGTCAAGAAGACAGCCAGTGGATTGA
GGACTTTTCTAGAGGAAATAATGGTATAGAATTTAGTTCATCTGCGACAG
AGCCTTGTTCCATTTCAAGGCATAACAATGTTTGGTCAGAGGCAACATCT
TCAGAGTCTGTTGCGATGCTTCTGAAGTCCGTTGGACAGGAGGAAAGGAT
TCAGGGAGAAACTTTGATTCAGGAGTTGGACACTGGCAATGAATTAGGCA
ATTTAGCTACAGAAATGGAGCCTAACTTGAAGAAGGACGATAAGGTGGAG
TCTATAACTACCTCACAACCTACTGCGACTCCTGATTCTTTTCTGGATCG
GAGGAATGTGAATGCTGTAGAATCAAAAAAGGATAATGTTCCTGTTGATG
GAAGTTCTGGCGTTGTTTCAATTGTTTCCAGTGTAATTCTAAGCGAGGCA
GATGAGGGACCAGATGATAAATGTGATGATACTACACATTTGAAAGTTAA
TATTATAGACCAGCCCGTTGACAATTTAGAAGGCTGCAACATTGACCAAG
GTTCTGCAGTGACTTCTCAGCTGGGTAATGTTGAAGTCGGGGCCTGCAAC
AAAGGTGAAAAGACTAGTGAGCCAATTCAAAATCCTCTGGGTGACACCTC
ATCTGTGGCTTGTGTAGATGCTCATACCTTTGAGGTTGTGAATAAAGATG
CCGAGTATTCTGCCTGTACTGGGGTCGAAGTCAGTATTGTTGAATTAAAG
GAGAACTCTTTCGGCAACCAACCAAACAGTCTGGAAAGACAGAATGTTGA
GGCCGTTGACATTAAGACAGTAAATTCTTCCTGTCCAGAGCATGATATGG
ACTCGGTGGTTGAGAATGAGAATTCTGAAAACTGTAGTGGGGGAGTGGCT
GTTGCTGAAGCTTCTTCGTTGCTTGCTGCAGACCATAAATTTACTGAACA
GGTGGAAGGAAGTGGCATTGAATATGCTGAGAATCCGGATACATCTGTAT
CTTGCATTGTCTCTGGATCACAATGTGGAATACAGTTGTCTTCTAAGGAT
TCAAGTGATCTCAGAACATCTGGAGTCCTTGAGGATAATAATTCTCCTGA
AGCACAAACATCCTCTTTCGTAGTTGGTGGACATGTGCAGATGAGCAAAA
GTCATATTTCCTCTGGGCAGGAAGATGTCCACCTTTTTGACAAAGATGTA
TCTTCTCTTGGGACAGAAGATGCAAAGTCACTCACAACATCCCTGCCTCC
TGATGAATCTAATAAAGCAAACATAGTTCAAGGAGCAGAACTCCTTAATT
CTGCGAGTAATGAGCGAGGTATATCATAAAAACTCTTTCAAAGCGAGGTA
TCCCCCCCCCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCCCCCCAATACTG
ATTTTGAATTATTAAATTTAAATCTATATTGTAATAGGATCAGAAGTTAC
AGACGAAATGAACTTATCATCGTGTGGCATGCCGATTGATCCTCCATTGC
TTCACGGGAGCAAGACTACTGCTGATGGAGCTACTTTTGGTGAGCAAGAG
CATAAGTCACAGGTTGCTAATTTATTAGGCACAGAGAGTTCACCACAAGT
GTCAGCTGATCTAGAGCCTTTTAGTTTTCCTGAATCTGGACAAGGTACAC
ACGTACATCTCATCAGCGCTTCCTAGTTACTGCATTAGATGGTTGTACAA
TAATCGACATTATATTTATGTTATGCAGCAAGTCGGATAAATCAAGAAGC
AGGTCCGGAGGGTTCCAAAAAGGTGGAAGCATGTCCATCTCTAATTAGTT
CAGAAATAAAGCTGGTTGACGATGCTGCACTAGCAGCACATAAAAGCAAT
GAAGAAATATATTTGGAAAGAAGTGCTGAATTGGCATCGTCTGAAGTTGC
AGGTACCAAGTTTGCTTCTTATGATATCTTTTCCATTCATTTTCATTATT
TTTGACCTTTAATCATCGACCAATTTCCTTTCCTTAATGTACTTATATTG
AAATTTATTATCAGATGCGGTGTTACCATCAAGCCAAACTCTTGTTCCTG
TAGAATCTGTTCCAGTCTCCATGCTAGAATCCTCTACTATTTCCCAAAAG
AATGACGATGTTACAGCAACTTCCGGAACAGAATTAACAGAAAATCCTAG
CACTAAAGGTTTTTATCTGAATTATGGTCTTCTTTTCTTGTTTGAGGTTG
TAGCCTTACCAGCTATGTCCTCTAGTACATTCCTTATAATAGATTAGATG
TGGATACATATTCTTCATTGTTTGCTATCTAGGGAGCCTTCTAATACCCT
AGCATTTGCTGTATTTAATAGTCACTGCAGACATCTGTGAGCTGAAGCTC
TTATATTGTAAATGTTGGTTTATTACTGTAGTTGATTCACCTGAGAAGAA
TGAAGATTCTGTTTCTCTTGCTTGCCCGTCAAAATGCATTTCAGATATTG
GGAACATGGATGGAGATGCCTCTGCTAATTCATTTGAAGAAAATGTGTAT
ACTCCTGCTATCATCAGTTGTGCAAAGGCTCCGCTAAGTGAAAAGGAACA
GAAAACAAGAACTATAGAGGTCTCAATTGGTGATGTCCAGCATCCTGAGG
CAACAGATGGTGCTGCTGAAATGGTTCAATCTGTTCCATTGGATGCTACT
TTCAACAATGGGGAAATCAGTACTTCTCAGGTTAACATGTCAACTGGTTT
AACAGAGGGAAAAATCATGAAGGATATGCAATTAAATCCTGTTCAGGTTC
ACGAAAGATCAACAGTATGTTTTTTATATTTGTTTGTGCTTGGTTGCCAA
ATTTATTACTTTGTATTCTTCTTCACCTCCTTTCTTAATCCTCACTTGTA
TCTGTAATGAAGGATGTCAAGGAGTATCCATCTGATGGTAATATGGGACC
TCCCTCTGTTGTCAGTTGTGTAAAGATTCCGATAAGTGAAACTGGACAGA
CGTCGAGAGGCAAAGATGCCTCAGTCTCCACTGTCCATCATTCTGAAGGA
ACAGCTGGTGCTGGTGAAAATGTTCAATCTGCTGCATTGCATATGGAACA
TGATAATTCCAATGAAGGGACAAACATCAGTATGGAGGTCAGTTCATCTA
CTGGTTTATCTGAAAGCGAAATCATCAAGGGTTCACCATCATATCCGAGC
ATCCCAGTCAACAAAATATCAACTGTATGTTTCTACTTGTATTGAATCAT
CCCTTTGTAGTTTTTTTACTTCTTTTATTCTGACCTAATGATTTATTTCT
AATTCAAATGTGTATATGGAAGGATGTTGAGGGATATCCTTTAGCAGCTG
ATTGCTCTCGGATAGATCTTACAATGCCTGAACATTCTCTTGAAAATTCT
GAAGGACCTGGACCTATGTCAGGTAAGAAACGTGCAGGTGCCAGAGGGAC
CTCTGAGCGGAAAACAAGACTAGGTTCTGTTAAGACAACAGCTAGAACAA
ATAGTAGGAAAAGAGGTATGCAGGAAACACCTTCGAAACAGTTTGACGAA
GATAAATCAATGATGATCTCAAGTTTACCTGGGAATAGCAATGCTGAACT
AAGTGGTATAAAAGTTTGTGGCGCCCTTCCTACTCCCATGTCTACTATTC
CAGATTTAAACACTTCAGTTACTCCCGCATATTATCAACAACCTTTCACT
GATACCCAACAAGTGCAATTGCGAGCACAGATACTTGTATATGGATCACT
AATGTAAGTTTTATTCTTGATTTGCTACATATTAAGCATGTCTTGTACAT
AGAGATGGGTCAGACCTATAAATTAAGAAAAGTGCTGGTCGTGGTATGAA
CTAGCTTCACTAGTATAAAGTGGGTAGGCTGATGATGCCTCTCAAAAGTT
CAAATATTATATTGAAGCTCAGTCATGCAAATTGAGTATTCAACACAAGG
ATTAGATTCGTTAGACTTAGTAATGTTGTAATGATGATTGATTACTTTAA
TAGACGTTCTAGTAAGAATTGATTTTGGCTATCTAGGATATTGTGTTTTA
GGTTTACGGAAGCAAATATACTCATTAATAAATGATGGTTGTCGCAGGCA
AAATTCCGTACCTGACGAGGCTTGTATGATTGCAGCATTTGGGCCATCTG
GTTAGTGTATTAGCTGTAATCTCTTTAATCCTTACATGACTATGTAAACT
TGCAAGCAGTTTAAGAACTGTTTTTTCTGCAGATGGTAGTGGTGGATGTC
TTTGGGAGTGTGCATGGCGTGCTTGTAGTGAAAGGATACAAACTCAGAAA
TCAGATGCCAGCAACCTGGAAACCCCTGTGCGATCATTCTCTGGCAAGTT
AAAATTCTTTTAATTTTTTTTGATTATGTAGATTTTGGATAATATTATTA
TAGTTGTGATATAATGATAGCAGGTAGCAAAGGTTCGGATCAACCAGTTA
AAAAAAGTAAAAGTTCACGTCAGAGTAAATCTACTTTACCTGCAGATAGA
GCTAGCAGTAAGGATATCCCATCGCCAGTTGTTAATCCTATTATACCCCT
ATCATCACCTCTTTGGAACGTATCTACCCCCTCTGGTGTTGGTTTGCAGT
CCAGTGGCACATATGTTGATTATCATCAGCCATTTGGTCCCTTGCAGCCT
TGTCAGCCCCAAGGTACAAAAGGTTTTGGTGAACAGAACCCCTCTTGGCT
TTCTCAGATTAACTTTCCTGGTCAGTGGGTTGCTACTCCACAAACTTCAT
CCCTTGATGTCAATGCATCTGTATCTTCAAAGTTTTGTACTGAACCAGTA
AAACTAACCCCATCCAAAGTTTCATCTGTGCCAAGTGACCCTGCCAGAAA
GCAAACCCAATTTTCTGTTTCCACTGGTGGGAGTGCTGGGCTGTCTTCAG
GGATTCATTTTCAGACTGATGTAACAAAGACTTCTGTTCTGCCTGGTCAG
ATTTGTGATAATACTAAACATAAGAAGAGGAAGAAGGTTTCTGTCAGCAA
GAGCCCAGGGCAAATCCCGTCACTAACTTTAGATCAGGCAGCATCTTTAA
GTGATACAAGTAATCATATCTCTAAAAAAGGAACTGCTCCCCAGGCTATT
TTCCAGAATTCTTTGCTCGCTCCAAGTCTGCCAGAAATGAGATCCCCTGC
TGTCAATAATGCATCATCTATGCCAAATGCAGCCACAGCTACTTTTTTGG
GATCAACAGGCCGTTCCAGCAACAATCTACCAGCTGTCTATCCATTAGTT
TCGAGTGATCAACCTACGAGAGTGGATCAGATTGTGGATAAGAATAGTAT
AATGTCAGAGGAATCACTGAATGCAGTCGAGGCAGCTAGGTTACAAGCAG
AAGGTGCTGCTGCACATGCTGCTGCTGCAGTCGGAAACTGCAATGGTGTT
TGGAGCCAGCTGAGTAAGCTGAAGAATTCTGGTTTAAGATTTGATGATGA
GACAAAACTTTCTTCTGCAGCTATGGCAATAGCTGCAGCTGCTTCTGTTG
CAAAGGCTGCAGCTGCAGCAGCCAAACTTGCATCGAATATTGCAATTGGA
GCAAAACTAATGGCGGATGAGGTATCAACCGCAAGTGTAACCAGAAAAGA
TCCCCATAGCACTGGAATGTCTATGGCCTGTTCTTCAAATAGTTCTCTGT
TGGCTGGAGAAGGAAATGTCTCCACTAGTTCAATTATTACTGCTGCGAAA
GAGACAGTTAAGAAGAGAGTCGAAGCTGCCACAGCTGCCTCAAAGCATGC
TGAAAACTTGGATGCTATGGTTAAAGCTGCTGAACTGGCAGCAGAGGCCG
TTTCACAAGCCGGAAAAATTGTTTCTATTGGCGATCCCTTGCCTTTGAGT
GAGTTGTTAGGCTCTGGTCCTATGGACTACTGGAGAACTCCCCAGGTATT
TCCTGAACAAGGGGTGATAGCAGGCATTGACCAACGGAAAACATTTGTTC
CTGAAAAGCTTGTTCCTGCTCAACCACCAAAAGATGGAGCAATTGTTACG
GGAGAAGCAGTGGATCGTGGTAGGTTATTGAAGAGATATTAATCTATTAT
AGTGTCTGTTTGTTGGTTTACTTATATGTTGATTGTATTGAAGGTACTAT
TGCAAGTGTTGGAAAGAACTCATTGTCTACTCAAAGAGGCCACCGTGCAT
CTGACCCTGCTCTTGATTCATATGGGGGAACAAACTCTGAAATTGTTAAA
TCTCGTGATGCCCAAAGAATTTCACCACTTACATCTCTTGAGAATGTAAT
GGTGGAAGGTTGCTTTGTCGAGGTTGGTTAAATATTTGCTTAGATTTCTT
ATGTTTATAAGTTATGATGCAGTTCTGTTATAACTTTTTATTCCCATTAT
AATTCCGAAGAAATGGATTGAACTTATTAAGTAACATTTTATTTTTCTTC
GTTATAATTTCTGTGTACTCTTAGCTTAACGAACGAATGTGGTATTTAAT
ATTTTAGGTCTTCAAAGAAGGGGGTAAATATAAGGCAGCATGGTATCCAG
CCAAGATTTTGAATTCGGATGACGAGAAAGCTTTTGTCTGTTACACTGAA
CTCCAAGCAGATGATGGTAATTTTTAGACTGCTGGGCAATATTTTAGCAG
TTGATATCTTTTTCAGAAACTTATATGAGTAGAATATTTGAACCAAATTT
AGTTTGTATAGCTTATTGAATTTTAGACGACTGTAATCGAATGTACTTAA
AATGCATAAGATTTCTTGTACTGATTAGCAAATAGCAAATCAAAGTAACA
TGACATGCTGCATGTCGTAATGATGCAACCGTCTGCAGAGATGGCAGTGT
GTTAATATTATATTATGTTAAGCCTAGAATGACTAAACCTGGACGGAGAA
GGGAATGTAGCTTAAGAGTATTATCTCAATTTTAGGGGTTTGGTAGCATA
TATGTGCCATTCCTGGTATCATCTTTTGTTTTTGGTTACTGACTAAATGA
TCCAGTAATCCGACATCCACATATTTACCTTGCTTTTTTCTTTTTAAGGG
TCAGGGAAACTAAAGGAATGGGTTCCACTTAAAGGGGATAACTCCAAGGC
ACCTATAATACGTATTCCACATCCTGCAACTAGCATGTGCTTTGAAAGAA
GTAGGAAGAGACGGAGAGCGGCAGTGATGGACTATACTTGGTGTGTTGGA
GACAGAGTTGACGCGTGGATGCAAGATTGGTAATCAATGAGCATATCTAT
CCAAATCTTCTTTTGACTAAATCAAATTGTCATTGACTTATCATAATTCA
GCTCTTTGTTTGTCTCTCTGAAAATTTGTTTTCCATCACAAAATTAATTA
AGCTATCAGCAGACATGAAATCACTTGCACTGAATTATCGTATATTGGAC
ATTGAATACAAATTTCTGTTTTTAAGATACTGCTAGTCAATATGTGCATT
CCCTTGACCGGCATAGGCATACTAAGATTTCATTGTTACTGTCTCAGAAA
ATATCTTTATATGTCATGAGCATTACTTGGTGTCGGCAACTAAATAGCTT
TCTTGGTCTGTTTCTTTTTTTTTTTTTTTTTGACATTACTTGGTATATTA
TGCTTGTTAAAAAAGTTTGTTGTTCTGGTTGCAATCCATGATAATAAATT
GTAGGACTTAAGTTGTAGACTACTTGATGATTGGTCGGGCGCCTAATTAT
CTGGTAGGTTTGTTTTCAACTAGCTCAGAGTAAAATTTGCTCGAGTGTTG
AACTAAAGGACCTTGTGCTATTGCTAATTTAATTGTGCAAAGGGCTCGGG
TTTCTATCAATGTAAATGCTGTAATGTTTTTTAATCATCACCTTACTCTT
ATCGTAACTTATAATCAAGATTAATAATCATTGCTATACTGCTGTTAACG
ATAGTCGCCAATTGTTAATCATGAATTTGCAGTATTGTTAAGTTTAAGAC
TTACAAGTTTTTCTTGCCCCCTTCTTTATTTTCTAAAAATGAACACATTG
TATTGACCTCTTAATATATCAGATTCCTTATCCAGTTTTTACAAATAAAC
TGTTATGGATGGCTTCAATACATCTCAACAGTTTGTCCTAGATTGAACGT
TTTTATTGTTTGCAGTTCTAAAGTCAGACTGTTGTACTGACTCATCTATT
TTTGTTGATTTTTATGTTTAGCTGGCTTGAGGGAGTTGTGTCTGAGAAGA
AAAATGATGAAACAACATTTAAAATATCTATTCCAGGTTTGTTGCAGTCT
ATTACATTGAGCTAGAGGCATTCTGTTGATATCTCTGATGATATTAAATT
GGAATGAGGTGAAAACTGTTTATGATTTTGTTGCAGCTCTTGGAGGCACT
TCAGCTGTTAAAACATGGAATCTTCGCCCAACCGTAACTTGGCAGGATGG
AAAGTGGATAGAGTGCCCCTCTGCAGTTCAGCAGTCCCCTACTCAGGTTT
AATACTTTCATGATTACAAGCTCTGCGCTCTAATTAACAAAAAACCTGCA
TTCTATTAATGGGAATATATGTAGAAAGATGCTGATTTTACTAAATTTGA
TATACTTTCCAGGGTGATACACCACAGGAGAAGCGTGTGAAGTTGGGACA
TCCCGCTGTAGAGGCTGCTAAGGTGGACAAGAGTTTAAGAGGCAATGATC
TCATGGAATCAAAGGAGCATGATGAATCAAGACAACTTCCTTTACTAGCT
AGTGAAAAAGAATTTAACATTGGGAATAATACTGGAGATATTAAACTTGA
TGCTCCAAGAATTGCAAGGACTGGATTGCAGAAAGAAGGCTCAAGGGTGG
TTTTTGGTGTTCCTAAGCCAGGAAAGAAGCGTAAATTCATGGATGTAAGC
AAACATCTTGACTCTGACCAATGCAATAAAAATGCAAAAACAAGCGATTT
AGTCAAAACTGCAAGATACTTGCCTCAAGGAAGAGGGGGTGGTCGTGGTT
GGAATAACAATACTAAAGATGATATCAAAGAAAAGCAAGCTAAAGAAGAC
AAGGTCAAAGTTATCAGGTCTGGAGTGGCACAGAAGACTAATGCTTTGCT
ATCTGCCAAATCTATGGGGAAAACTGTCAGCAAGGAACAGAACAATCCAG
CTCTGCGGGACCTTATGGAATTTGGCTCCGTCTCTAATTCCCCTTCTGAA
GGTCCAACTTCTTCAAAAGGTCCTAGAGTTCCAAATAAAAGAGTACCCTC
TTCAAGTACCAAAACCGTCCTTCTGAATAAAGGAAAGCATGCAGCTGGTG
GAGAGGTTGATAAGAAAGTTGATCCGCATGTTACTGAGATTCGAAGATCA
AACCGGAAGATTCAACCAACATCACGGGTATAGTCAACAAATTTGGTCTT
GCTTTCTAATTGCACCTGCATAGTAATATTGTTCCGTATAATTGACTGAT
CATGCTGTCATGGCCTTCTCTTGTGATTGCAGTAGGATAAATATTGAACA
CAAATTAATTAGATTTTTTCACTAATTTAGAGATACTTGCATTTTTAATT
ATTCAGAAAAGATCCCTTATAGTGGCTACAGTTTTGGATGTCATGATAGT
GTCATTCAATTACTGAAAAACAGACAAATTAGGATCAATATGGCACTTTA
GAGTTTTTGACCAAAAGTTTTAAGCCTTGTGTATAGCTTAGAATTCTACT
TTTCCGGGATAGGAGGAAAATTTGTTTTTGTTGTATCTTAGTGTAGTGGC
AGCACCTTTGGGACGACTGTGTCATATGATCTGTTATATTTCTTGCAGCT
ATTGGAAGGATTGCAGAGCTCTCTAATCGGTTCAAAGATGCCCTCTGTCC
CGCATGAAAAAGTTCAAAAAAACCTGAACAGAGGTAATAATATTAAAATT
TGA

Sequence Length:

10253

Sequence Checksum:

9f1196951c9094593be91d0f6b42a25b

View location in JBrowse:

DCARv2_Chr8:19538509..19548761-

Cds:

>DCAR_027770cds ATGGATTATGATGACAAAATTTCTGAAGGCCATAAGTCAGCTAATGCAGA GAATTCCAAGTCATCACCCGTGGTGCCTCCATTTGCTCTTCCCAAGTATG ATTTTGATGATAGCCTACAGGGTGACCTAAGATTTGAAGGATTGGTCGAA AATGAAGTTTTTCTTGGCATTTCGAGTCAAGAAGACAGCCAGTGGATTGA GGACTTTTCTAGAGGAAATAATGGTATAGAATTTAGTTCATCTGCGACAG AGCCTTGTTCCATTTCAAGGCATAACAATGTTTGGTCAGAGGCAACATCT TCAGAGTCTGTTGCGATGCTTCTGAAGTCCGTTGGACAGGAGGAAAGGAT TCAGGGAGAAACTTTGATTCAGGAGTTGGACACTGGCAATGAATTAGGCA ATTTAGCTACAGAAATGGAGCCTAACTTGAAGAAGGACGATAAGGTGGAG TCTATAACTACCTCACAACCTACTGCGACTCCTGATTCTTTTCTGGATCG GAGGAATGTGAATGCTGTAGAATCAAAAAAGGATAATGTTCCTGTTGATG GAAGTTCTGGCGTTGTTTCAATTGTTTCCAGTGTAATTCTAAGCGAGGCA GATGAGGGACCAGATGATAAATGTGATGATACTACACATTTGAAAGTTAA TATTATAGACCAGCCCGTTGACAATTTAGAAGGCTGCAACATTGACCAAG GTTCTGCAGTGACTTCTCAGCTGGGTAATGTTGAAGTCGGGGCCTGCAAC AAAGGTGAAAAGACTAGTGAGCCAATTCAAAATCCTCTGGGTGACACCTC ATCTGTGGCTTGTGTAGATGCTCATACCTTTGAGGTTGTGAATAAAGATG CCGAGTATTCTGCCTGTACTGGGGTCGAAGTCAGTATTGTTGAATTAAAG GAGAACTCTTTCGGCAACCAACCAAACAGTCTGGAAAGACAGAATGTTGA GGCCGTTGACATTAAGACAGTAAATTCTTCCTGTCCAGAGCATGATATGG ACTCGGTGGTTGAGAATGAGAATTCTGAAAACTGTAGTGGGGGAGTGGCT GTTGCTGAAGCTTCTTCGTTGCTTGCTGCAGACCATAAATTTACTGAACA GGTGGAAGGAAGTGGCATTGAATATGCTGAGAATCCGGATACATCTGTAT CTTGCATTGTCTCTGGATCACAATGTGGAATACAGTTGTCTTCTAAGGAT TCAAGTGATCTCAGAACATCTGGAGTCCTTGAGGATAATAATTCTCCTGA AGCACAAACATCCTCTTTCGTAGTTGGTGGACATGTGCAGATGAGCAAAA GTCATATTTCCTCTGGGCAGGAAGATGTCCACCTTTTTGACAAAGATGTA TCTTCTCTTGGGACAGAAGATGCAAAGTCACTCACAACATCCCTGCCTCC TGATGAATCTAATAAAGCAAACATAGTTCAAGGAGCAGAACTCCTTAATT CTGCGAGTAATGAGCGAGGATCAGAAGTTACAGACGAAATGAACTTATCA TCGTGTGGCATGCCGATTGATCCTCCATTGCTTCACGGGAGCAAGACTAC TGCTGATGGAGCTACTTTTGGTGAGCAAGAGCATAAGTCACAGGTTGCTA ATTTATTAGGCACAGAGAGTTCACCACAAGTGTCAGCTGATCTAGAGCCT TTTAGTTTTCCTGAATCTGGACAAGCAAGTCGGATAAATCAAGAAGCAGG TCCGGAGGGTTCCAAAAAGGTGGAAGCATGTCCATCTCTAATTAGTTCAG AAATAAAGCTGGTTGACGATGCTGCACTAGCAGCACATAAAAGCAATGAA GAAATATATTTGGAAAGAAGTGCTGAATTGGCATCGTCTGAAGTTGCAGA TGCGGTGTTACCATCAAGCCAAACTCTTGTTCCTGTAGAATCTGTTCCAG TCTCCATGCTAGAATCCTCTACTATTTCCCAAAAGAATGACGATGTTACA GCAACTTCCGGAACAGAATTAACAGAAAATCCTAGCACTAAAGTTGATTC ACCTGAGAAGAATGAAGATTCTGTTTCTCTTGCTTGCCCGTCAAAATGCA TTTCAGATATTGGGAACATGGATGGAGATGCCTCTGCTAATTCATTTGAA GAAAATGTGTATACTCCTGCTATCATCAGTTGTGCAAAGGCTCCGCTAAG TGAAAAGGAACAGAAAACAAGAACTATAGAGGTCTCAATTGGTGATGTCC AGCATCCTGAGGCAACAGATGGTGCTGCTGAAATGGTTCAATCTGTTCCA TTGGATGCTACTTTCAACAATGGGGAAATCAGTACTTCTCAGGTTAACAT GTCAACTGGTTTAACAGAGGGAAAAATCATGAAGGATATGCAATTAAATC CTGTTCAGGTTCACGAAAGATCAACAGATGTCAAGGAGTATCCATCTGAT GGTAATATGGGACCTCCCTCTGTTGTCAGTTGTGTAAAGATTCCGATAAG TGAAACTGGACAGACGTCGAGAGGCAAAGATGCCTCAGTCTCCACTGTCC ATCATTCTGAAGGAACAGCTGGTGCTGGTGAAAATGTTCAATCTGCTGCA TTGCATATGGAACATGATAATTCCAATGAAGGGACAAACATCAGTATGGA GGTCAGTTCATCTACTGGTTTATCTGAAAGCGAAATCATCAAGGGTTCAC CATCATATCCGAGCATCCCAGTCAACAAAATATCAACTGATGTTGAGGGA TATCCTTTAGCAGCTGATTGCTCTCGGATAGATCTTACAATGCCTGAACA TTCTCTTGAAAATTCTGAAGGACCTGGACCTATGTCAGGTAAGAAACGTG CAGGTGCCAGAGGGACCTCTGAGCGGAAAACAAGACTAGGTTCTGTTAAG ACAACAGCTAGAACAAATAGTAGGAAAAGAGGTATGCAGGAAACACCTTC GAAACAGTTTGACGAAGATAAATCAATGATGATCTCAAGTTTACCTGGGA ATAGCAATGCTGAACTAAGTGGTATAAAAGTTTGTGGCGCCCTTCCTACT CCCATGTCTACTATTCCAGATTTAAACACTTCAGTTACTCCCGCATATTA TCAACAACCTTTCACTGATACCCAACAAGTGCAATTGCGAGCACAGATAC TTGTATATGGATCACTAATGCAAAATTCCGTACCTGACGAGGCTTGTATG ATTGCAGCATTTGGGCCATCTGATGGTAGTGGTGGATGTCTTTGGGAGTG TGCATGGCGTGCTTGTAGTGAAAGGATACAAACTCAGAAATCAGATGCCA GCAACCTGGAAACCCCTGTGCGATCATTCTCTGGCAATTGTGATATAATG ATAGCAGGTAGCAAAGGTTCGGATCAACCAGTTAAAAAAAGTAAAAGTTC ACGTCAGAGTAAATCTACTTTACCTGCAGATAGAGCTAGCAGTAAGGATA TCCCATCGCCAGTTGTTAATCCTATTATACCCCTATCATCACCTCTTTGG AACGTATCTACCCCCTCTGGTGTTGGTTTGCAGTCCAGTGGCACATATGT TGATTATCATCAGCCATTTGGTCCCTTGCAGCCTTGTCAGCCCCAAGGTA CAAAAGGTTTTGGTGAACAGAACCCCTCTTGGCTTTCTCAGATTAACTTT CCTGGTCAGTGGGTTGCTACTCCACAAACTTCATCCCTTGATGTCAATGC ATCTGTATCTTCAAAGTTTTGTACTGAACCAGTAAAACTAACCCCATCCA AAGTTTCATCTGTGCCAAGTGACCCTGCCAGAAAGCAAACCCAATTTTCT GTTTCCACTGGTGGGAGTGCTGGGCTGTCTTCAGGGATTCATTTTCAGAC TGATGTAACAAAGACTTCTGTTCTGCCTGGTCAGATTTGTGATAATACTA AACATAAGAAGAGGAAGAAGGTTTCTGTCAGCAAGAGCCCAGGGCAAATC CCGTCACTAACTTTAGATCAGGCAGCATCTTTAAGTGATACAAGTAATCA TATCTCTAAAAAAGGAACTGCTCCCCAGGCTATTTTCCAGAATTCTTTGC TCGCTCCAAGTCTGCCAGAAATGAGATCCCCTGCTGTCAATAATGCATCA TCTATGCCAAATGCAGCCACAGCTACTTTTTTGGGATCAACAGGCCGTTC CAGCAACAATCTACCAGCTGTCTATCCATTAGTTTCGAGTGATCAACCTA CGAGAGTGGATCAGATTGTGGATAAGAATAGTATAATGTCAGAGGAATCA CTGAATGCAGTCGAGGCAGCTAGGTTACAAGCAGAAGGTGCTGCTGCACA TGCTGCTGCTGCAGTCGGAAACTGCAATGGTGTTTGGAGCCAGCTGAGTA AGCTGAAGAATTCTGGTTTAAGATTTGATGATGAGACAAAACTTTCTTCT GCAGCTATGGCAATAGCTGCAGCTGCTTCTGTTGCAAAGGCTGCAGCTGC AGCAGCCAAACTTGCATCGAATATTGCAATTGGAGCAAAACTAATGGCGG ATGAGGTATCAACCGCAAGTGTAACCAGAAAAGATCCCCATAGCACTGGA ATGTCTATGGCCTGTTCTTCAAATAGTTCTCTGTTGGCTGGAGAAGGAAA TGTCTCCACTAGTTCAATTATTACTGCTGCGAAAGAGACAGTTAAGAAGA GAGTCGAAGCTGCCACAGCTGCCTCAAAGCATGCTGAAAACTTGGATGCT ATGGTTAAAGCTGCTGAACTGGCAGCAGAGGCCGTTTCACAAGCCGGAAA AATTGTTTCTATTGGCGATCCCTTGCCTTTGAGTGAGTTGTTAGGCTCTG GTCCTATGGACTACTGGAGAACTCCCCAGGTATTTCCTGAACAAGGGGTG ATAGCAGGCATTGACCAACGGAAAACATTTGTTCCTGAAAAGCTTGTTCC TGCTCAACCACCAAAAGATGGAGCAATTGTTACGGGAGAAGCAGTGGATC GTGGTACTATTGCAAGTGTTGGAAAGAACTCATTGTCTACTCAAAGAGGC CACCGTGCATCTGACCCTGCTCTTGATTCATATGGGGGAACAAACTCTGA AATTGTTAAATCTCGTGATGCCCAAAGAATTTCACCACTTACATCTCTTG AGAATGTAATGGTGGAAGGTTGCTTTGTCGAGGTCTTCAAAGAAGGGGGT AAATATAAGGCAGCATGGTATCCAGCCAAGATTTTGAATTCGGATGACGA GAAAGCTTTTGTCTGTTACACTGAACTCCAAGCAGATGATGGGTCAGGGA AACTAAAGGAATGGGTTCCACTTAAAGGGGATAACTCCAAGGCACCTATA ATACGTATTCCACATCCTGCAACTAGCATGTGCTTTGAAAGAAGTAGGAA GAGACGGAGAGCGGCAGTGATGGACTATACTTGGTGTGTTGGAGACAGAG TTGACGCGTGGATGCAAGATTGCTGGCTTGAGGGAGTTGTGTCTGAGAAG AAAAATGATGAAACAACATTTAAAATATCTATTCCAGCTCTTGGAGGCAC TTCAGCTGTTAAAACATGGAATCTTCGCCCAACCGTAACTTGGCAGGATG GAAAGTGGATAGAGTGCCCCTCTGCAGTTCAGCAGTCCCCTACTCAGGGT GATACACCACAGGAGAAGCGTGTGAAGTTGGGACATCCCGCTGTAGAGGC TGCTAAGGTGGACAAGAGTTTAAGAGGCAATGATCTCATGGAATCAAAGG AGCATGATGAATCAAGACAACTTCCTTTACTAGCTAGTGAAAAAGAATTT AACATTGGGAATAATACTGGAGATATTAAACTTGATGCTCCAAGAATTGC AAGGACTGGATTGCAGAAAGAAGGCTCAAGGGTGGTTTTTGGTGTTCCTA AGCCAGGAAAGAAGCGTAAATTCATGGATGTAAGCAAACATCTTGACTCT GACCAATGCAATAAAAATGCAAAAACAAGCGATTTAGTCAAAACTGCAAG ATACTTGCCTCAAGGAAGAGGGGGTGGTCGTGGTTGGAATAACAATACTA AAGATGATATCAAAGAAAAGCAAGCTAAAGAAGACAAGGTCAAAGTTATC AGGTCTGGAGTGGCACAGAAGACTAATGCTTTGCTATCTGCCAAATCTAT GGGGAAAACTGTCAGCAAGGAACAGAACAATCCAGCTCTGCGGGACCTTA TGGAATTTGGCTCCGTCTCTAATTCCCCTTCTGAAGGTCCAACTTCTTCA AAAGGTCCTAGAGTTCCAAATAAAAGAGTACCCTCTTCAAGTACCAAAAC CGTCCTTCTGAATAAAGGAAAGCATGCAGCTGGTGGAGAGGTTGATAAGA AAGTTGATCCGCATGTTACTGAGATTCGAAGATCAAACCGGAAGATTCAA CCAACATCACGGCTATTGGAAGGATTGCAGAGCTCTCTAATCGGTTCAAA GATGCCCTCTGTCCCGCATGAAAAAGTTCAAAAAAACCTGAACAGAGGTA ATAATATTAAAATTTGA

Pep:

>DCAR_027770pep MDYDDKISEGHKSANAENSKSSPVVPPFALPKYDFDDSLQGDLRFEGLVE NEVFLGISSQEDSQWIEDFSRGNNGIEFSSSATEPCSISRHNNVWSEATS SESVAMLLKSVGQEERIQGETLIQELDTGNELGNLATEMEPNLKKDDKVE SITTSQPTATPDSFLDRRNVNAVESKKDNVPVDGSSGVVSIVSSVILSEA DEGPDDKCDDTTHLKVNIIDQPVDNLEGCNIDQGSAVTSQLGNVEVGACN KGEKTSEPIQNPLGDTSSVACVDAHTFEVVNKDAEYSACTGVEVSIVELK ENSFGNQPNSLERQNVEAVDIKTVNSSCPEHDMDSVVENENSENCSGGVA VAEASSLLAADHKFTEQVEGSGIEYAENPDTSVSCIVSGSQCGIQLSSKD SSDLRTSGVLEDNNSPEAQTSSFVVGGHVQMSKSHISSGQEDVHLFDKDV SSLGTEDAKSLTTSLPPDESNKANIVQGAELLNSASNERGSEVTDEMNLS SCGMPIDPPLLHGSKTTADGATFGEQEHKSQVANLLGTESSPQVSADLEP FSFPESGQASRINQEAGPEGSKKVEACPSLISSEIKLVDDAALAAHKSNE EIYLERSAELASSEVADAVLPSSQTLVPVESVPVSMLESSTISQKNDDVT ATSGTELTENPSTKVDSPEKNEDSVSLACPSKCISDIGNMDGDASANSFE ENVYTPAIISCAKAPLSEKEQKTRTIEVSIGDVQHPEATDGAAEMVQSVP LDATFNNGEISTSQVNMSTGLTEGKIMKDMQLNPVQVHERSTDVKEYPSD GNMGPPSVVSCVKIPISETGQTSRGKDASVSTVHHSEGTAGAGENVQSAA LHMEHDNSNEGTNISMEVSSSTGLSESEIIKGSPSYPSIPVNKISTDVEG YPLAADCSRIDLTMPEHSLENSEGPGPMSGKKRAGARGTSERKTRLGSVK TTARTNSRKRGMQETPSKQFDEDKSMMISSLPGNSNAELSGIKVCGALPT PMSTIPDLNTSVTPAYYQQPFTDTQQVQLRAQILVYGSLMQNSVPDEACM IAAFGPSDGSGGCLWECAWRACSERIQTQKSDASNLETPVRSFSGNCDIM IAGSKGSDQPVKKSKSSRQSKSTLPADRASSKDIPSPVVNPIIPLSSPLW NVSTPSGVGLQSSGTYVDYHQPFGPLQPCQPQGTKGFGEQNPSWLSQINF PGQWVATPQTSSLDVNASVSSKFCTEPVKLTPSKVSSVPSDPARKQTQFS VSTGGSAGLSSGIHFQTDVTKTSVLPGQICDNTKHKKRKKVSVSKSPGQI PSLTLDQAASLSDTSNHISKKGTAPQAIFQNSLLAPSLPEMRSPAVNNAS SMPNAATATFLGSTGRSSNNLPAVYPLVSSDQPTRVDQIVDKNSIMSEES LNAVEAARLQAEGAAAHAAAAVGNCNGVWSQLSKLKNSGLRFDDETKLSS AAMAIAAAASVAKAAAAAAKLASNIAIGAKLMADEVSTASVTRKDPHSTG MSMACSSNSSLLAGEGNVSTSSIITAAKETVKKRVEAATAASKHAENLDA MVKAAELAAEAVSQAGKIVSIGDPLPLSELLGSGPMDYWRTPQVFPEQGV IAGIDQRKTFVPEKLVPAQPPKDGAIVTGEAVDRGTIASVGKNSLSTQRG HRASDPALDSYGGTNSEIVKSRDAQRISPLTSLENVMVEGCFVEVFKEGG KYKAAWYPAKILNSDDEKAFVCYTELQADDGSGKLKEWVPLKGDNSKAPI IRIPHPATSMCFERSRKRRRAAVMDYTWCVGDRVDAWMQDCWLEGVVSEK KNDETTFKISIPALGGTSAVKTWNLRPTVTWQDGKWIECPSAVQQSPTQG DTPQEKRVKLGHPAVEAAKVDKSLRGNDLMESKEHDESRQLPLLASEKEF NIGNNTGDIKLDAPRIARTGLQKEGSRVVFGVPKPGKKRKFMDVSKHLDS DQCNKNAKTSDLVKTARYLPQGRGGGRGWNNNTKDDIKEKQAKEDKVKVI RSGVAQKTNALLSAKSMGKTVSKEQNNPALRDLMEFGSVSNSPSEGPTSS KGPRVPNKRVPSSSTKTVLLNKGKHAAGGEVDKKVDPHVTEIRRSNRKIQ PTSRLLEGLQSSLIGSKMPSVPHEKVQKNLNRGNNIKI*