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| Marker Type | Marker Abbreviation | Full Marker Name or Target | Technology Reference |
|---|---|---|---|
| Fingerprinting | ISSR | Inter-simple sequence repeat | Zietkiewicz et al., 1994 |
| RAPD | Random amplified polymorphic DNA | Williams et al., 1990 | |
| AFLP | Amplified Fragment Length Polymorphism | Vos et al., 1995 | |
| SRAP | Sequence-Related Amplified Polymorphism | Li and Quiros, 2001 | |
| DArT | Diversity Arrays Technology | Jaccoud et al., 2001, Wenzl et al., 2004 | |
| Feature-specific PCR with cleavage | CAPS | Cleaved amplified polymorphic sequences | Konieczny and Ausubel, 1993 |
| Feature-specific PCR | EST marker | Expressed Sequence Tag | Parkinson and Blaxter, 2009 |
| EST-SSR | SSR sequence from an EST | Ellis and Burke, 2007 | |
| Gene | Gene sequence | ||
| SCAR | Sequence Characterized Amplified Regions | Paran and Michelmore, 1993 | |
| SSR | Microsatellites, Simple Sequence Repeats | Tautz, 1989 | |
| SAMPL | Selective Amplification of Microsatellite Polymorphic Loci | Vivek, 1999 | |
| STS | Sequence-Tagged Site | info at NCBI | |
| TD | Transposon Display | Van den Broeck et al. 1998, Vandenbussche et al. 2013 | |
| Feature-specific Other | Isozyme | Isozyme | Schulz et al., 1993 |
| SNP-specific | SNP | Single nucleotide polymorphism | Ahmadian et al., 2000 |
| Hybridization | RFLP | Restriction Fragment Length Polymorphism | Bonierbale et al., 1988 |
| FISH | Fluorescent In-Situ Hybridization | Iovene et al., 2008 | |
| Misc. markers | HRM | High resolution melting marker | Liew et al., 2004 |
| N/A | Chromosome end placeholder markers for FISH maps |