Daucus carota

Resource Type: 
Organism
Abbreviation: 
Daucus carota
Superclass: 
Apiaceae
Genus: 
Daucus
Species: 
carota
Lineage: 
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliopsida; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus; Daucus sect. Daucus
Cross Reference: 
GRINTaxon
NCBITaxon
Analysis: 
NameDescription
NCBI accession DQ898156; Daucus carota chloroplast, complete genome.

Assembly deposited as NCBI GenBank accession DQ898156

View this assembly in JBrowse by visiting this page

DNA was sheared by nebulization, size fractionated to 4–6 kb, linker ligated and cloned into pHOS2, a TIGR medium copy vector. A total of 1231 high quality reads with an average length of 808 bases was generated during the random (1126 reads) and closure (105 reads) phases of sequencing. Sequences were assembled using TIGR assembler and scaffolded using Bambus. Sequence finishing included directed PCR to span gaps and directed primer walking of clones to cover the entire genome and to complete regions of low depth of coverage.
NCBI Genome 860 Assembly ASM162521v1; Daucus carota cv. DH1; Chromosome level assembly

This assembly represents the NCBI GenBank record for the Daucus carota DH1 Chromosome level assembly published in 2016. This is based on the same assembly as described in CarrotOmics record Carrot Genome Assembly DCARv2
Biosample Browser: 
There are 590 biosamples.
NameTissueTreatmentDescription
SAMN05944901storage rootNot set
SAMN05944902storage rootNot set
SAMN05944903storage rootNot set
SAMN05944904storage rootNot set
SAMN05944905storage rootNot set
SAMN05944906storage rootNot set
SAMN05944907storage rootNot set
SAMN05944908storage rootNot set
SAMN05944909storage rootNot set
SAMN05944910storage rootNot set
Accession: 
AccessionAccession Type
PI 230723Germplasm Accession
PI 522175Germplasm Accession
Ames 18684Germplasm Accession
Ames 18689Germplasm Accession
HRIGRU 9277Germplasm Accession
PI 652184Germplasm Accession
PI 142852Germplasm Accession
K 9651Germplasm Accession
Ames 18663Germplasm Accession
PI 661239Germplasm Accession