MK001087 GSSR-088

Resource Type: 
Genetic Marker
Name: 
MK001087 GSSR-088
Identifier: 
MK001087_GSSR_088
Organism: 
Daucus carota subspecies sativus
Marker Type: 
SSR
Publication: 
  1. Budahn H, Barański R, Grzebelus D, Kiełkowska A, Straka P, Metge K, Linke B, Nothnagel T. Mapping genes governing flower architecture and pollen development in a double mutant population of carrot.. Frontiers in plant science. 2014; 5:504.
  2. Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
  3. Cavagnaro PF, Chung SM, Manin S, Yildiz M, Ali A, Alessandro MS, Iorizzo M, Senalik DA, Simon PW. Microsatellite isolation and marker development in carrot - genomic distribution, linkage mapping, genetic diversity analysis and marker transferability across Apiaceae.. BMC genomics. 2011 Aug 01; 12:386.
Cross Reference: 
NCBI Nuccore
Relationship: 
There are 5 relationships.
Relationships
The genetic_marker, MK001087 GSSR-088, is adjacent to primer, GSSR-88-F.
The genetic_marker, MK001087 GSSR-088, is adjacent to primer, GSSR-88-R.
The genetic_marker, MK001087 GSSR-088, is located in gene, DCAR_029910.
The genetic_marker, MK001087 GSSR-088, is located in gene, LOC108202512.
The marker_locus, GSSR-088, is an instance of genetic_marker, MK001087 GSSR-088.
MapViewer Marker Map Positions: 
Map NameLinkage GroupPositionLocusMapViewer
2016 70349 NG bin mapChr933.184GSSR-088MapViewer
2016 Integ NG bin mapCH928.233GSSR-088MapViewer
2014 yel×colaLG934.2GSSR-088MapViewer
2011 B493×QAL B493LG0968.3GSSR-088MapViewer
2016 70349 NG full mapChr933.184GSSR-088MapViewer
2011 B493×QAL QALLG0971.4GSSR-088MapViewer
2016 Integ NG full mapCH925.556GSSR-088MapViewer
Synonyms: 
  • MK001087
Sequence Coordinates: 
DCARv2_Chr9:17581116..17581381+
View location in JBrowse: 
DCARv2_Chr9:17581116..17581381+
Sequence: 
ACCTTAGTGGTTCTATGGTTCTATTTTAAGCATTGGTTCTCTCTTGAGCG
CGATAATACACACACACACACACACACACACACATATATTTTCACATATT
TGGTTTCTCACAGCAGAAGTTCAACATTTCCTTGTATATTATTTAGAAAG
TAGATTTATTAGTTACGAACATGTATATTGTATAAATCTTCATTTCCATA
TACATACATATATACTATAACAGCTATAACAGATAGGCATATATATGCAT
ATACACTCACTACATAGACACACACACATATCACTTTCTATTCAACAAGG
CGGGTGTTCAGCTGATTAGGGTTTTATGAAATAAGCTCTTTTCTTCATTT
TGTCCAATTTGGGTTGGATTTTGATTGGGTTTTGCACTAGTTGACTGACT
AGTTGACAAGTCGACCGAATA
Sequences: 
>MK001087_GSSR_088 ID=MK001087_GSSR_088; Name=MK001087 GSSR-088; organism=Daucus carota; type=genetic_marker
ACCTTAGTGGTTCTATGGTTCTATTTTAAGCATTGGTTCTCTCTTGAGCG
CGATAATACACACACACACACACACACACACACATATATTTTCACATATT
TGGTTTCTCACAGCAGAAGTTCAACATTTCCTTGTATATTATTTAGAAAG
TAGATTTATTAGTTACGAACATGTATATTGTATAAATCTTCATTTCCATA
TACATACATATATACTATAACAGCTATAACAGATAGGCATATATATGCAT
ATACACTCACTACATAGACACACACACATATCACTTTCTATTCAACAAGG
CGGGTGTTCAGCTGATTAGGGTTTTATGAAATAAGCTCTTTTCTTCATTT
TGTCCAATTTGGGTTGGATTTTGATTGGGTTTTGCACTAGTTGACTGACT
AGTTGACAAGTCGACCGAATA
This is the primary representative sequence for this feature.
Sequence Length: 
421