MK001089 GSSR-090

Resource Type: 
Genetic Marker
Name: 
MK001089 GSSR-090
Identifier: 
MK001089_GSSR_090
Marker Type: 
SSR
Publication: 
  1. Parsons J, Matthews W, Iorizzo M, Roberts P, Simon P. Meloidogyne incognita nematode resistance QTL in carrot. Molecular breeding. 2015; 35(5).
  2. Parsons Joshua D. QTL for Meloidogyne incognita root knot nematode resistance and other traits of interest in carrot (Daucus carota). Ph.D. Thesis. 2014. University of Wisconsin-Madison
  3. Cavagnaro PF, Chung SM, Manin S, Yildiz M, Ali A, Alessandro MS, Iorizzo M, Senalik DA, Simon PW. Microsatellite isolation and marker development in carrot - genomic distribution, linkage mapping, genetic diversity analysis and marker transferability across Apiaceae.. BMC genomics. 2011 Aug 01; 12:386.
Cross Reference: 
NCBI NuccoreLoading content
Relationship: 
There are 5 relationships.
Relationships
The genetic_marker, MK001089 GSSR-090, is adjacent to primer, GSSR-90-F.
The genetic_marker, MK001089 GSSR-090, is adjacent to primer, GSSR-90-R.
The genetic_marker, MK001089 GSSR-090, is located in gene, DCAR_011680.
The genetic_marker, MK001089 GSSR-090, is located in gene, LOC108214748.
The marker_locus, GSSR-090, is an instance of genetic_marker, MK001089 GSSR-090.
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MapViewer Marker Map Positions: 
Map NameLinkage GroupPositionLocusMapViewer
2015 MB MergedChr346.38GSSR-090MapViewer
2014 J.Parsons Th. Fig_3.5Chr346.38GSSR-090MapViewer
2014 J.Parsons Th. Fig_2.4Chr346.38GSSR-090MapViewer
2015 SFF×HM2Chr341.585GSSR-090MapViewer
2011 B493×QAL B493LG0381GSSR-090MapViewer
2011 B493×QAL QALLG0395.4GSSR-090MapViewer
2014 J.Parsons Th. SFF×HM2Chr341.585GSSR-090MapViewer
Synonyms: 
  • MK001089
Sequence Coordinates: 
DCARv2_Chr3:39091427..39091659-
View location in JBrowse: 
Sequence: 
ACAGCACTGCATTAATAGCTACAACAGTAGAAAAAGTTTTATCATCATTT
TCTCTAAGCATTTTTTATTAGTTAGTAGGCTGTATGCTATATGTTTTACT
GAATATTAAATCATCTACCAATGATTTTCTAGTAAGGAAATATTGAATAG
AGCATTTACTGAGCTAGTAGTAGTTCTGATTACTGGTCTCATTCTATTCT
CTTGTAAAATTATGCACCATTGTCCTGTGTGTGTGTGTGCGTGTGTGTAG
ATGTGTATATATGTGTGTGCATATACATGTATGTGTATATATATGTGTGT
GTGTGTTTTAAGAAAGTTAGCAGATAAACAAGTTTACATATATGATTACA
AACAGGGTCGGACTTTTTGCCTTTCATATAGCATTGATAGGAAACCCTCA
GCATCCTCTTGTAGTTTTGTCTTTAGCCTCTCTTCTGTATTATGGGAATT
GGAAGGAAG
Sequences: 
>MK001089_GSSR_090 ID=MK001089_GSSR_090; Name=MK001089 GSSR-090; organism=Daucus carota; type=genetic_marker
ACAGCACTGCATTAATAGCTACAACAGTAGAAAAAGTTTTATCATCATTT
TCTCTAAGCATTTTTTATTAGTTAGTAGGCTGTATGCTATATGTTTTACT
GAATATTAAATCATCTACCAATGATTTTCTAGTAAGGAAATATTGAATAG
AGCATTTACTGAGCTAGTAGTAGTTCTGATTACTGGTCTCATTCTATTCT
CTTGTAAAATTATGCACCATTGTCCTGTGTGTGTGTGTGCGTGTGTGTAG
ATGTGTATATATGTGTGTGCATATACATGTATGTGTATATATATGTGTGT
GTGTGTTTTAAGAAAGTTAGCAGATAAACAAGTTTACATATATGATTACA
AACAGGGTCGGACTTTTTGCCTTTCATATAGCATTGATAGGAAACCCTCA
GCATCCTCTTGTAGTTTTGTCTTTAGCCTCTCTTCTGTATTATGGGAATT
GGAAGGAAG
This is the primary representative sequence for this feature.
Sequence Length: 
459