Resource Type:
Genetic Marker
Name:
MK001089 GSSR-090
Identifier:
MK001089_GSSR_090
Organism:
Marker Type:
SSR
Publication:
- Parsons J, Matthews W, Iorizzo M, Roberts P, Simon P. Meloidogyne incognita nematode resistance QTL in carrot. Molecular breeding. 2015; 35(5).
- Parsons Joshua D. QTL for Meloidogyne incognita root knot nematode resistance and other traits of interest in carrot (Daucus carota). Ph.D. Thesis. 2014. University of Wisconsin-Madison
- Cavagnaro PF, Chung SM, Manin S, Yildiz M, Ali A, Alessandro MS, Iorizzo M, Senalik DA, Simon PW. Microsatellite isolation and marker development in carrot - genomic distribution, linkage mapping, genetic diversity analysis and marker transferability across Apiaceae.. BMC genomics. 2011 Aug 01; 12:386.
Cross Reference:
| NCBI Nuccore |  |
|---|
Relationship:
| Relationships |
|---|
| The genetic_marker, MK001089 GSSR-090, is adjacent to primer, GSSR-90-F. |
| The genetic_marker, MK001089 GSSR-090, is adjacent to primer, GSSR-90-R. |
| The genetic_marker, MK001089 GSSR-090, is located in gene, DCAR_011680. |
| The genetic_marker, MK001089 GSSR-090, is located in gene, LOC108214748. |
| The marker_locus, GSSR-090, is an instance of genetic_marker, MK001089 GSSR-090. |
MapViewer Marker Map Positions:
| Map Name | Linkage Group | Position | Locus | MapViewer |
|---|---|---|---|---|
| 2015 MB Merged | Chr3 | 46.38 | GSSR-090 | MapViewer |
| 2014 J.Parsons Th. Fig_3.5 | Chr3 | 46.38 | GSSR-090 | MapViewer |
| 2014 J.Parsons Th. Fig_2.4 | Chr3 | 46.38 | GSSR-090 | MapViewer |
| 2015 SFF×HM2 | Chr3 | 41.585 | GSSR-090 | MapViewer |
| 2011 B493×QAL B493 | LG03 | 81 | GSSR-090 | MapViewer |
| 2011 B493×QAL QAL | LG03 | 95.4 | GSSR-090 | MapViewer |
| 2014 J.Parsons Th. SFF×HM2 | Chr3 | 41.585 | GSSR-090 | MapViewer |
Synonyms:
- MK001089
Sequence Coordinates:
DCARv2_Chr3:39091427..39091659-
View location in JBrowse:
Sequence:
ACAGCACTGCATTAATAGCTACAACAGTAGAAAAAGTTTTATCATCATTT
TCTCTAAGCATTTTTTATTAGTTAGTAGGCTGTATGCTATATGTTTTACT
GAATATTAAATCATCTACCAATGATTTTCTAGTAAGGAAATATTGAATAG
AGCATTTACTGAGCTAGTAGTAGTTCTGATTACTGGTCTCATTCTATTCT
CTTGTAAAATTATGCACCATTGTCCTGTGTGTGTGTGTGCGTGTGTGTAG
ATGTGTATATATGTGTGTGCATATACATGTATGTGTATATATATGTGTGT
GTGTGTTTTAAGAAAGTTAGCAGATAAACAAGTTTACATATATGATTACA
AACAGGGTCGGACTTTTTGCCTTTCATATAGCATTGATAGGAAACCCTCA
GCATCCTCTTGTAGTTTTGTCTTTAGCCTCTCTTCTGTATTATGGGAATT
GGAAGGAAG
Sequences:
>MK001089_GSSR_090 ID=MK001089_GSSR_090; Name=MK001089 GSSR-090; organism=Daucus carota; type=genetic_marker
ACAGCACTGCATTAATAGCTACAACAGTAGAAAAAGTTTTATCATCATTT
TCTCTAAGCATTTTTTATTAGTTAGTAGGCTGTATGCTATATGTTTTACT
GAATATTAAATCATCTACCAATGATTTTCTAGTAAGGAAATATTGAATAG
AGCATTTACTGAGCTAGTAGTAGTTCTGATTACTGGTCTCATTCTATTCT
CTTGTAAAATTATGCACCATTGTCCTGTGTGTGTGTGTGCGTGTGTGTAG
ATGTGTATATATGTGTGTGCATATACATGTATGTGTATATATATGTGTGT
GTGTGTTTTAAGAAAGTTAGCAGATAAACAAGTTTACATATATGATTACA
AACAGGGTCGGACTTTTTGCCTTTCATATAGCATTGATAGGAAACCCTCA
GCATCCTCTTGTAGTTTTGTCTTTAGCCTCTCTTCTGTATTATGGGAATT
GGAAGGAAG
This is the primary representative sequence for this feature.
Sequence Length:
459