MK001147 GSSR-148 | CarrotOmics

Resource Type:

Genetic Marker

Name:

MK001147 GSSR-148

Identifier:

MK001147_GSSR_148

Organism:

Daucus carota subspecies sativus

Marker Type:

SSR

Publication:

Salgon Sylvia. Phenotyping and pigment analysis in carrot (Daucus carota L.) and genetic mapping with SSR markers and candidate genes. M.S. Thesis. 2011. Ministère de l'Agriculture Montpellier
Parsons J, Matthews W, Iorizzo M, Roberts P, Simon P. Meloidogyne incognita nematode resistance QTL in carrot. Molecular breeding. 2015; 35(5).
Parsons Joshua D. QTL for Meloidogyne incognita root knot nematode resistance and other traits of interest in carrot (Daucus carota). Ph.D. Thesis. 2014. University of Wisconsin-Madison
Cavagnaro PF, Chung SM, Manin S, Yildiz M, Ali A, Alessandro MS, Iorizzo M, Senalik DA, Simon PW. Microsatellite isolation and marker development in carrot - genomic distribution, linkage mapping, genetic diversity analysis and marker transferability across Apiaceae.. BMC genomics. 2011 Aug 01; 12:386.

Cross Reference:


NCBI Nuccore	FJ816256

Relationship:

There are 5 relationships.
Relationships
The genetic_marker, MK001147 GSSR-148, is adjacent to primer, GSSR-148-F.
The genetic_marker, MK001147 GSSR-148, is adjacent to primer, GSSR-148-R.
The genetic_marker, MK001147 GSSR-148, is located in gene, DCAR_018280.
The genetic_marker, MK001147 GSSR-148, is located in gene, LOC108222957.
The marker_locus, GSSR-148, is an instance of genetic_marker, MK001147 GSSR-148.

MapViewer Marker Map Positions:


Map Name	Linkage Group	Position	Locus	MapViewer
2011 SS1061	1061-5	14.841	GSSR-148	MapViewer
2011 B493×QAL QAL	LG05	127.1	GSSR-148	MapViewer
2015 SFF×HM2	Chr5	42.189	GSSR-148	MapViewer
2014 J.Parsons Th. SFF×HM2	Chr5	42.189	GSSR-148	MapViewer
2014 J.Parsons Th. Fig_3.5	Chr5	40.097	GSSR-148	MapViewer
2011 B493×QAL B493	LG05	122.6	GSSR-148	MapViewer
2011 SS1061QTL	1061QTL-2	16.92	GSSR-148	MapViewer
2014 J.Parsons Th. Fig_2.4	Chr5	40.097	GSSR-148	MapViewer
2015 MB Merged	Chr5	40.097	GSSR-148	MapViewer

Synonyms:

MK001147

Sequence Coordinates:

DCARv2_Chr5:28147084..28147294-

View location in JBrowse:

DCARv2_Chr5:28147084..28147294-

Sequence:

TTGAACCTTTAAAAAAAAAAAAAGAAGAACCCTTAGAACCTTCTAGTATT
AATAGGGTTCTGCAGCAGAACTGTACATGCAAAAAGTGTCGTGTTTATGT
ATTATAATTTAAAATTAATTTTGAATACACACAACGATGCAAAAAGCATG
TATTTAAAATCTATTTAAAATTTAAGGTTCTGCAGTAGAACCTTAGTGGT
TCCATGGTTCTATTTTAAGGACTGATTCTCTCTTGAGCGCGACCCTATAT
ATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTTTGTATGTAT
GTATCATACTATTTCATTACCCAAACGTTAAAGT

Sequences:

Primary genetic marker Sequence (334bp)

>MK001147_GSSR_148 ID=MK001147_GSSR_148; Name=MK001147 GSSR-148; organism=Daucus carota; type=genetic_marker
TTGAACCTTTAAAAAAAAAAAAAGAAGAACCCTTAGAACCTTCTAGTATT
AATAGGGTTCTGCAGCAGAACTGTACATGCAAAAAGTGTCGTGTTTATGT
ATTATAATTTAAAATTAATTTTGAATACACACAACGATGCAAAAAGCATG
TATTTAAAATCTATTTAAAATTTAAGGTTCTGCAGTAGAACCTTAGTGGT
TCCATGGTTCTATTTTAAGGACTGATTCTCTCTTGAGCGCGACCCTATAT
ATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTTTGTATGTAT
GTATCATACTATTTCATTACCCAAACGTTAAAGT

This is the primary representative sequence for this feature.

Sequence Length:

334