Resource Type:
Genetic Marker
Name:
MK001246 BSSR-089
Identifier:
MK001246_BSSR_089
Organism:
Marker Type:
SSR
Publication:
- Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
- Parsons J, Matthews W, Iorizzo M, Roberts P, Simon P. Meloidogyne incognita nematode resistance QTL in carrot. Molecular breeding. 2015; 35(5).
- Parsons Joshua D. QTL for Meloidogyne incognita root knot nematode resistance and other traits of interest in carrot (Daucus carota). Ph.D. Thesis. 2014. University of Wisconsin-Madison
Cross Reference:
| NCBI Nuccore |  |
|---|
Relationship:
| Relationships |
|---|
| The genetic_marker, MK001246 BSSR-089, is adjacent to primer, BSSR-89F. |
| The genetic_marker, MK001246 BSSR-089, is adjacent to primer, BSSR-89R. |
| The genetic_marker, MK001246 BSSR-089, is located in gene, DCAR_030442. |
| The genetic_marker, MK001246 BSSR-089, is located in gene, LOC108202695. |
| The marker_locus, BSSR-089, is an instance of genetic_marker, MK001246 BSSR-089. |
MapViewer Marker Map Positions:
| Map Name | Linkage Group | Position | Locus | MapViewer |
|---|---|---|---|---|
| 2014 J.Parsons Th. SFF×HM2 | Chr9 | 35.172 | BSSR-089 | MapViewer |
| 2015 MB Merged | Chr9 | 39.071 | BSSR-089 | MapViewer |
| 2015 SFF×HM2 | Chr9 | 35.172 | BSSR-089 | MapViewer |
| 2016 Integ NG full map | CH9 | 38.79 | BSSR-089 | MapViewer |
| 2016 70796 NG full map | Chr9 | 43.338 | BSSR-089 | MapViewer |
| 2016 Integ NG bin map | CH9 | 40.845 | BSSR-089 | MapViewer |
| 2014 J.Parsons Th. Fig_3.5 | Chr9 | 39.071 | BSSR-089 | MapViewer |
| 2014 J.Parsons Th. Br1091×HM1F3 | Chr9 | 59.721 | BSSR-089 | MapViewer |
| 2016 70796 NG bin map | Chr9 | 43.338 | BSSR-089 | MapViewer |
| 2014 J.Parsons Th. Fig_2.4 | Chr9 | 39.071 | BSSR-089 | MapViewer |
Synonyms:
- MK001246
Sequence Coordinates:
DCARv2_Chr9:25403910..25404238+
View location in JBrowse:
Sequence:
TACACTACGAAGATGATGTGCTCTAATCAACAGTGCAGACAATCAAATCA
TGAAGCTAAACTGTTGAATATTTGCAAGTACATTAGGAAATTAAATCCAA
TAGATGTTTCCATAGTTATTGCCTAGTGACATGGCAGGTTCAATGTGACT
GCCACTTTTGGGCAACCTTGCTATCTCTCGTTTATATTACTCTCAAAACG
TATAATATATTCAACATATGAAGTGGACCCTGTGGCAACTTTTGGGTGGC
TCAACACTAGAGTCTAGAGCATTCCAATGACAAAGTTGACAAAAGTGAAA
TGGATAAGAGAAATAATAAAATAATGCATTCTGAGATGCTCCAACATCAC
TTAAAAATGCACATGTATGCTTGTGAGCATCAAATCAACAATCAAAAAAT
TTCATAACAAATATAGCATAAAATGCTTAAGCACAGAAATGTTATGTATC
CTGTTTAAACAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNACACACACACACACACACACACACACACACACACACA
CACACATCTATAATGCAGAAATTGTTAAGGTTTAGTACTCACAGCTAGTA
AAGCCATTCGAATTCTCCTTTCCTCCTCATCTTGATCTGCATACTTTTCC
TTCATCTTCTTCAGTTTACCCTTCTGCCCACGGCTCAATTTTCCACCACC
ACCTGGTTTTGATAATTGATTCTGTTTGTCAGACTCACTTCTTGTATCAC
TATTATTTTCAACATCCTGTTCTTTTCCATGATCAACAGACCCATTAACG
CTATCACTTTTCTGGCCTTTCTTCTGCTTTCTCCTCTCGGCTTTGGAGAC
ATAAGGCTTTTCTCCACACGCGAAATAGCCATGTCCAAGATTTTCTTGTG
CAGTTTCTTCTTGAGAACCTTGGAATCCATAAGTTTTAGCAGATGCAGAA
GCAGGCCCAAGCTCCAGAGCTCTGTCTATAAGATCCTCGAGTTGCGGGGT
AACAGAATTAACAGTTGTTCCAGAAGTTTCGGACCCAGTATGCTTGTCAT
ACAAAGTCGCGCTGGTTTCCACAGTAGATAATGTTTCAAGTTTCGGTTCT
TCTCTTGTCAACTCTGGAGTACTTCCAGATGGCGGAT
Sequences:
>MK001246_BSSR_089 ID=MK001246_BSSR_089; Name=MK001246 BSSR-089; organism=Daucus carota; type=genetic_marker
TACACTACGAAGATGATGTGCTCTAATCAACAGTGCAGACAATCAAATCA
TGAAGCTAAACTGTTGAATATTTGCAAGTACATTAGGAAATTAAATCCAA
TAGATGTTTCCATAGTTATTGCCTAGTGACATGGCAGGTTCAATGTGACT
GCCACTTTTGGGCAACCTTGCTATCTCTCGTTTATATTACTCTCAAAACG
TATAATATATTCAACATATGAAGTGGACCCTGTGGCAACTTTTGGGTGGC
TCAACACTAGAGTCTAGAGCATTCCAATGACAAAGTTGACAAAAGTGAAA
TGGATAAGAGAAATAATAAAATAATGCATTCTGAGATGCTCCAACATCAC
TTAAAAATGCACATGTATGCTTGTGAGCATCAAATCAACAATCAAAAAAT
TTCATAACAAATATAGCATAAAATGCTTAAGCACAGAAATGTTATGTATC
CTGTTTAAACAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNACACACACACACACACACACACACACACACACACACA
CACACATCTATAATGCAGAAATTGTTAAGGTTTAGTACTCACAGCTAGTA
AAGCCATTCGAATTCTCCTTTCCTCCTCATCTTGATCTGCATACTTTTCC
TTCATCTTCTTCAGTTTACCCTTCTGCCCACGGCTCAATTTTCCACCACC
ACCTGGTTTTGATAATTGATTCTGTTTGTCAGACTCACTTCTTGTATCAC
TATTATTTTCAACATCCTGTTCTTTTCCATGATCAACAGACCCATTAACG
CTATCACTTTTCTGGCCTTTCTTCTGCTTTCTCCTCTCGGCTTTGGAGAC
ATAAGGCTTTTCTCCACACGCGAAATAGCCATGTCCAAGATTTTCTTGTG
CAGTTTCTTCTTGAGAACCTTGGAATCCATAAGTTTTAGCAGATGCAGAA
GCAGGCCCAAGCTCCAGAGCTCTGTCTATAAGATCCTCGAGTTGCGGGGT
AACAGAATTAACAGTTGTTCCAGAAGTTTCGGACCCAGTATGCTTGTCAT
ACAAAGTCGCGCTGGTTTCCACAGTAGATAATGTTTCAAGTTTCGGTTCT
TCTCTTGTCAACTCTGGAGTACTTCCAGATGGCGGAT
This is the primary representative sequence for this feature.
Sequence Length:
1187