Resource Type:
Genetic Marker
Name:
MK004396 K1840
Identifier:
MK004396_K1840
Organism:
Marker Type:
SNP
Publication:
- Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
- Parsons J, Matthews W, Iorizzo M, Roberts P, Simon P. Meloidogyne incognita nematode resistance QTL in carrot. Molecular breeding. 2015; 35(5).
- Parsons Joshua D. QTL for Meloidogyne incognita root knot nematode resistance and other traits of interest in carrot (Daucus carota). Ph.D. Thesis. 2014. University of Wisconsin-Madison
Relationship:
| Relationships |
|---|
| The genetic_marker, MK004396 K1840, is adjacent to primer, K1840_X. |
| The genetic_marker, MK004396 K1840, is adjacent to primer, K1840_Y. |
| The genetic_marker, MK004396 K1840, is adjacent to primer, K1840_Common. |
| The genetic_marker, MK004396 K1840, is located in gene, DCAR_001431. |
| The genetic_marker, MK004396 K1840, is located in gene, LOC108204368. |
| The marker_locus, K1840, is an instance of genetic_marker, MK004396 K1840. |
MapViewer Marker Map Positions:
| Map Name | Linkage Group | Position | Locus | MapViewer |
|---|---|---|---|---|
| 2014 J.Parsons Th. Br1091×HM1 | Chr1 | 41.811 | K1840 | MapViewer |
| 2016 Integ NG full map | CH1 | 34.243 | K1840 | MapViewer |
| 2016 80592 NG bin map | Chr1 | 41.811 | K1840 | MapViewer |
| 2015 MB Merged | Chr1 | 33.794 | K1840 | MapViewer |
| 2015 Br1091×HM1 | Chr1 | 41.811 | K1840 | MapViewer |
| 2016 Integ NG bin map | CH1 | 35.638 | K1840 | MapViewer |
| 2014 J.Parsons Th. Fig_3.5 | Chr1 | 33.794 | K1840 | MapViewer |
| 2014 J.Parsons Th. Fig_2.4 | Chr1 | 33.794 | K1840 | MapViewer |
| 2016 80592 NG full map | Chr1 | 41.811 | K1840 | MapViewer |
Synonyms:
- MK004396
Sequence Coordinates:
DCARv2_Chr1:15209615..15209673-
View location in JBrowse:
Sequence:
CTTACTTCCTTAATGAAGATAACGATTCAAATAAACTYACCTTACGGTTT
AATGATGGGATAGATGGTGAA
Sequences:
>MK004396_K1840 ID=MK004396_K1840; Name=MK004396 K1840; organism=Daucus carota; type=genetic_marker
CTTACTTCCTTAATGAAGATAACGATTCAAATAAACTYACCTTACGGTTT
AATGATGGGATAGATGGTGAA
This is the primary representative sequence for this feature.
Sequence Length:
71
Five Prime Flanking Region:
CTTACTTCCTTAATGAAGATAACGATTCAAATAAACT
Three Prime Flanking Region:
ACCTTACGGTTTAATGATGGGATAGATGGTGAA
SNP:
C/T