Resource Type:
Genetic Marker
Name:
MK004555 K1999
Identifier:
MK004555_K1999
Organism:
Marker Type:
SNP
Publication:
- Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
- Parsons J, Matthews W, Iorizzo M, Roberts P, Simon P. Meloidogyne incognita nematode resistance QTL in carrot. Molecular breeding. 2015; 35(5).
- Parsons Joshua D. QTL for Meloidogyne incognita root knot nematode resistance and other traits of interest in carrot (Daucus carota). Ph.D. Thesis. 2014. University of Wisconsin-Madison
Relationship:
| Relationships |
|---|
| The genetic_marker, MK004555 K1999, is adjacent to primer, K1999_X. |
| The genetic_marker, MK004555 K1999, is adjacent to primer, K1999_Y. |
| The genetic_marker, MK004555 K1999, is adjacent to primer, K1999_Common. |
| The genetic_marker, MK004555 K1999, is located in gene, DCAR_002465. |
| The genetic_marker, MK004555 K1999, is located in gene, LOC108204395. |
| The marker_locus, K1999, is an instance of genetic_marker, MK004555 K1999. |
MapViewer Marker Map Positions:
| Map Name | Linkage Group | Position | Locus | MapViewer |
|---|---|---|---|---|
| 2016 Integ NG full map | CH1 | 46.205 | K1999 | MapViewer |
| 2015 Br1091×HM1 | Chr1 | 27.949 | K1999 | MapViewer |
| 2016 80592 NG bin map | Chr1 | 27.949 | K1999 | MapViewer |
| 2014 J.Parsons Th. Br1091×HM1 | Chr1 | 27.949 | K1999 | MapViewer |
| 2016 70796 NG full map | Chr1 | 24.959 | K1999 | MapViewer |
| 2016 Integ NG bin map | CH1 | 50.818 | K1999 | MapViewer |
| 2016 80592 NG full map | Chr1 | 27.949 | K1999 | MapViewer |
Synonyms:
- MK004555
Sequence Coordinates:
DCARv2_Chr1:29593467..29593518+
View location in JBrowse:
Sequence:
TGGCGAYRTCACCATCTTTGGTAGCATATTGAAAAGGRAGGTGTTGCCAG
ACATCCTCAGCCAAATGAGGC
Sequences:
>MK004555_K1999 ID=MK004555_K1999; Name=MK004555 K1999; organism=Daucus carota; type=genetic_marker
TGGCGAYRTCACCATCTTTGGTAGCATATTGAAAAGGRAGGTGTTGCCAG
ACATCCTCAGCCAAATGAGGC
This is the primary representative sequence for this feature.
Sequence Length:
71
Five Prime Flanking Region:
TGGCGAYRTCACCATCTTTGGTAGCATATTGAAAAGG
Three Prime Flanking Region:
AGGTGTTGCCAGACATCCTCAGCCAAATGAGGC
SNP:
A/G