Resource Type:
Genetic Marker
Name:
MK005666 K3110
Identifier:
MK005666_K3110
Organism:
Marker Type:
SNP
Publication:
- Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
- Parsons J, Matthews W, Iorizzo M, Roberts P, Simon P. Meloidogyne incognita nematode resistance QTL in carrot. Molecular breeding. 2015; 35(5).
- Parsons Joshua D. QTL for Meloidogyne incognita root knot nematode resistance and other traits of interest in carrot (Daucus carota). Ph.D. Thesis. 2014. University of Wisconsin-Madison
Relationship:
| Relationships |
|---|
| The genetic_marker, MK005666 K3110, is adjacent to primer, K3110_X. |
| The genetic_marker, MK005666 K3110, is adjacent to primer, K3110_Y. |
| The genetic_marker, MK005666 K3110, is adjacent to primer, K3110_Common. |
| The genetic_marker, MK005666 K3110, is located in gene, DCAR_003713. |
| The genetic_marker, MK005666 K3110, is located in gene, LOC108204339. |
| The marker_locus, K3110, is an instance of genetic_marker, MK005666 K3110. |
MapViewer Marker Map Positions:
| Map Name | Linkage Group | Position | Locus | MapViewer |
|---|---|---|---|---|
| 2014 J.Parsons Th. Br1091×HM1 | Chr1 | 23.258 | K3110 | MapViewer |
| 2014 J.Parsons Th. Fig_2.4 | Chr1 | 53.408 | K3110 | MapViewer |
| 2014 J.Parsons Th. Fig_3.5 | Chr1 | 53.408 | K3110 | MapViewer |
| 2016 Integ NG bin map | CH1 | 55.657 | K3110 | MapViewer |
| 2016 Integ NG full map | CH1 | 52.505 | K3110 | MapViewer |
| 2016 80592 NG full map | Chr1 | 23.258 | K3110 | MapViewer |
| 2015 Br1091×HM1 | Chr1 | 23.258 | K3110 | MapViewer |
| 2015 MB Merged | Chr1 | 53.408 | K3110 | MapViewer |
| 2016 80592 NG bin map | Chr1 | 23.258 | K3110 | MapViewer |
Synonyms:
- MK005666
Sequence Coordinates:
DCARv2_Chr1:41322897..41322948+
View location in JBrowse:
Sequence:
ACAARAAAGAGCACCCGTTCGCACAGCTTTCTGGGTCYGATAACATCATT
GCTTTCACAACTGAAAGATAC
Sequences:
>MK005666_K3110 ID=MK005666_K3110; Name=MK005666 K3110; organism=Daucus carota; type=genetic_marker
ACAARAAAGAGCACCCGTTCGCACAGCTTTCTGGGTCYGATAACATCATT
GCTTTCACAACTGAAAGATAC
This is the primary representative sequence for this feature.
Sequence Length:
71
Five Prime Flanking Region:
ACAARAAAGAGCACCCGTTCGCACAGCTTTCTGGGTC
Three Prime Flanking Region:
GATAACATCATTGCTTTCACAACTGAAAGATAC
SNP:
C/T