Resource Type:
Genetic Marker
Name:
MK006527 K3971
Identifier:
MK006527_K3971
Organism:
Marker Type:
SNP
Publication:
- Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
- Cavagnaro PF, Iorizzo M, Yildiz M, Senalik D, Parsons J, Ellison S, Simon PW. A gene-derived SNP-based high resolution linkage map of carrot including the location of QTL conditioning root and leaf anthocyanin pigmentation.. BMC genomics. 2014 Dec 16; 15:1118.
- Parsons J, Matthews W, Iorizzo M, Roberts P, Simon P. Meloidogyne incognita nematode resistance QTL in carrot. Molecular breeding. 2015; 35(5).
- Parsons Joshua D. QTL for Meloidogyne incognita root knot nematode resistance and other traits of interest in carrot (Daucus carota). Ph.D. Thesis. 2014. University of Wisconsin-Madison
Relationship:
| Relationships |
|---|
| The genetic_marker, MK006527 K3971, is adjacent to primer, K3971_X. |
| The genetic_marker, MK006527 K3971, is adjacent to primer, K3971_Y. |
| The genetic_marker, MK006527 K3971, is adjacent to primer, K3971_Common. |
| The genetic_marker, MK006527 K3971, is located in gene, DCAR_015976. |
| The genetic_marker, MK006527 K3971, is located in gene, LOC108219604. |
| The marker_locus, K3971, is an instance of genetic_marker, MK006527 K3971. |
MapViewer Marker Map Positions:
| Map Name | Linkage Group | Position | Locus | MapViewer |
|---|---|---|---|---|
| 2016 70349 NG bin map | Chr4 | 58.241 | K3971 | MapViewer |
| 2014 J.Parsons Th. HM3 | Chr4 | 14.341 | K3971 | MapViewer |
| 2016 Integ NG bin map | CH4 | 11.02 | K3971 | MapViewer |
| 2014 70349 | Chromosome_4 | 58.241 | K3971 | MapViewer |
| 2015 MB Merged | Chr4 | 11.338 | K3971 | MapViewer |
| 2014 J.Parsons Th. Fig_2.4 | Chr4 | 11.338 | K3971 | MapViewer |
| 2016 Integ NG full map | CH4 | 10.843 | K3971 | MapViewer |
| 2016 70349 NG full map | Chr4 | 58.241 | K3971 | MapViewer |
| 2015 HM3 | Chr4 | 14.341 | K3971 | MapViewer |
| 2014 J.Parsons Th. Fig_3.5 | Chr4 | 11.338 | K3971 | MapViewer |
Synonyms:
- MK006527
Sequence Coordinates:
DCARv2_Chr4:3366445..3366502+
View location in JBrowse:
Sequence:
CCCTGACCTCCATAAGTCTCAAAAATAGTACAACTATKAGTCTGCAAAAT
CTCGCCATTAGTGCCAATGAC
Sequences:
>MK006527_K3971 ID=MK006527_K3971; Name=MK006527 K3971; organism=Daucus carota; type=genetic_marker
CCCTGACCTCCATAAGTCTCAAAAATAGTACAACTATKAGTCTGCAAAAT
CTCGCCATTAGTGCCAATGAC
This is the primary representative sequence for this feature.
Sequence Length:
71
Five Prime Flanking Region:
CCCTGACCTCCATAAGTCTCAAAAATAGTACAACTAT
Three Prime Flanking Region:
AGTCTGCAAAATCTCGCCATTAGTGCCAATGAC
SNP:
G/T