Resource Type:
Genetic Marker
Name:
MK004582 K2026
Identifier:
MK004582_K2026
Organism:
Marker Type:
SNP
Publication:
- Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
- Cavagnaro PF, Iorizzo M, Yildiz M, Senalik D, Parsons J, Ellison S, Simon PW. A gene-derived SNP-based high resolution linkage map of carrot including the location of QTL conditioning root and leaf anthocyanin pigmentation.. BMC genomics. 2014 Dec 16; 15:1118.
Relationship:
| Relationships |
|---|
| The genetic_marker, MK004582 K2026, is adjacent to primer, K2026_X. |
| The genetic_marker, MK004582 K2026, is adjacent to primer, K2026_Y. |
| The genetic_marker, MK004582 K2026, is adjacent to primer, K2026_Common. |
| The genetic_marker, MK004582 K2026, is adjacent to gene, DCAR_009627. |
| The genetic_marker, MK004582 K2026, is located in gene, LOC108214672. |
| The marker_locus, K2026, is an instance of genetic_marker, MK004582 K2026. |
MapViewer Marker Map Positions:
| Map Name | Linkage Group | Position | Locus | MapViewer |
|---|---|---|---|---|
| 2016 Integ NG bin map | CH3 | 23.426 | K2026 | MapViewer |
| 2016 70349 NG bin map | Chr3 | 62.129 | K2026 | MapViewer |
| 2016 80592 NG full map | Chr3 | 18.239 | K2026 | MapViewer |
| 2014 70349 | Chromosome_3 | 62.129 | K2026 | MapViewer |
| 2016 70349 NG full map | Chr3 | 62.129 | K2026 | MapViewer |
| 2016 Integ NG full map | CH3 | 22.875 | K2026 | MapViewer |
Synonyms:
- MK004582
Sequence Coordinates:
DCARv2_Chr3:9463284..9463337+
View location in JBrowse:
Sequence:
TTTGYAGGTAGAATGTCTAGGAAGCAGTGAAGATGGARAATGGAGCGAGT
GATTTGGCTTATAAGTTTGCG
Sequences:
>MK004582_K2026 ID=MK004582_K2026; Name=MK004582 K2026; organism=Daucus carota; type=genetic_marker
TTTGYAGGTAGAATGTCTAGGAAGCAGTGAAGATGGARAATGGAGCGAGT
GATTTGGCTTATAAGTTTGCG
This is the primary representative sequence for this feature.
Sequence Length:
71
Five Prime Flanking Region:
TTTGYAGGTAGAATGTCTAGGAAGCAGTGAAGATGGA
Three Prime Flanking Region:
AATGGAGCGAGTGATTTGGCTTATAAGTTTGCG
SNP:
A/G