MK005118 K2562

Resource Type: 
Genetic Marker
Name: 
MK005118 K2562
Identifier: 
MK005118_K2562
Organism: 
Daucus carota subspecies sativus
Marker Type: 
SNP
Publication: 
  1. Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
  2. Cavagnaro PF, Iorizzo M, Yildiz M, Senalik D, Parsons J, Ellison S, Simon PW. A gene-derived SNP-based high resolution linkage map of carrot including the location of QTL conditioning root and leaf anthocyanin pigmentation.. BMC genomics. 2014 Dec 16; 15:1118.
Relationship: 
There are 6 relationships.
Relationships
The genetic_marker, MK005118 K2562, is adjacent to primer, K2562_X.
The genetic_marker, MK005118 K2562, is adjacent to primer, K2562_Y.
The genetic_marker, MK005118 K2562, is adjacent to primer, K2562_Common.
The genetic_marker, MK005118 K2562, is located in gene, DCAR_016603.
The genetic_marker, MK005118 K2562, is located in gene, LOC108221936.
The marker_locus, K2562, is an instance of genetic_marker, MK005118 K2562.
MapViewer Marker Map Positions: 
Map NameLinkage GroupPositionLocusMapViewer
2016 70349 NG full mapChr554.612K2562MapViewer
2016 Integ NG bin mapCH514.625K2562MapViewer
2016 70796 NG full mapChr561.618K2562MapViewer
2014 70349Chromosome_554.612K2562MapViewer
2016 Integ NG full mapCH514.59K2562MapViewer
Synonyms: 
  • MK005118
Sequence Coordinates: 
DCARv2_Chr5:5240178..5240228+
View location in JBrowse: 
DCARv2_Chr5:5240178..5240228+
Sequence: 
CCTCCTCTCCTTCTTCCCCTCTTCCTCTTATCTGCTCMCACCTTTCCTGC
AAATCAATGTCATTCTTATTC
Sequences: 
>MK005118_K2562 ID=MK005118_K2562; Name=MK005118 K2562; organism=Daucus carota; type=genetic_marker
CCTCCTCTCCTTCTTCCCCTCTTCCTCTTATCTGCTCMCACCTTTCCTGC
AAATCAATGTCATTCTTATTC
This is the primary representative sequence for this feature.
Sequence Length: 
71
Five Prime Flanking Region: 
CCTCCTCTCCTTCTTCCCCTCTTCCTCTTATCTGCTC
Three Prime Flanking Region: 
CACCTTTCCTGCAAATCAATGTCATTCTTATTC
SNP: 
A/C