Resource Type:
Genetic Marker
Name:
MK006276 K3720
Identifier:
MK006276_K3720
Organism:
Marker Type:
SNP
Publication:
- Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
- Cavagnaro PF, Iorizzo M, Yildiz M, Senalik D, Parsons J, Ellison S, Simon PW. A gene-derived SNP-based high resolution linkage map of carrot including the location of QTL conditioning root and leaf anthocyanin pigmentation.. BMC genomics. 2014 Dec 16; 15:1118.
Relationship:
| Relationships |
|---|
| The genetic_marker, MK006276 K3720, is adjacent to primer, K3720_X. |
| The genetic_marker, MK006276 K3720, is adjacent to primer, K3720_Y. |
| The genetic_marker, MK006276 K3720, is adjacent to primer, K3720_Common. |
| The genetic_marker, MK006276 K3720, is located in gene, DCAR_029350. |
| The genetic_marker, MK006276 K3720, is located in gene, LOC108200493. |
| The marker_locus, K3720, is an instance of genetic_marker, MK006276 K3720. |
MapViewer Marker Map Positions:
| Map Name | Linkage Group | Position | Locus | MapViewer |
|---|---|---|---|---|
| 2016 70796 NG full map | Chr9 | 11.154 | K3720 | MapViewer |
| 2016 70349 NG bin map | Chr9 | 9.493 | K3720 | MapViewer |
| 2014 70349 | Chromosome_9 | 9.493 | K3720 | MapViewer |
| 2016 Integ NG full map | CH9 | 9.368 | K3720 | MapViewer |
| 2016 70796 NG bin map | Chr9 | 11.154 | K3720 | MapViewer |
| 2016 Integ NG bin map | CH9 | 10.502 | K3720 | MapViewer |
| 2016 70349 NG full map | Chr9 | 9.493 | K3720 | MapViewer |
Synonyms:
- MK006276
Sequence Coordinates:
DCARv2_Chr9:5266313..5266374-
View location in JBrowse:
Sequence:
GYGGCTTTGCCCAATCAACCAAAGTCTCTTCATCTACWCCTCCAGCCCTC
TCATCACCTAATGCTCGCCTT
Sequences:
>MK006276_K3720 ID=MK006276_K3720; Name=MK006276 K3720; organism=Daucus carota; type=genetic_marker
GYGGCTTTGCCCAATCAACCAAAGTCTCTTCATCTACWCCTCCAGCCCTC
TCATCACCTAATGCTCGCCTT
This is the primary representative sequence for this feature.
Sequence Length:
71
Five Prime Flanking Region:
GYGGCTTTGCCCAATCAACCAAAGTCTCTTCATCTAC
Three Prime Flanking Region:
CCTCCAGCCCTCTCATCACCTAATGCTCGCCTT
SNP:
A/T