MK005100 K2544

Resource Type: 
Genetic Marker
Name: 
MK005100 K2544
Identifier: 
MK005100_K2544
Organism: 
Daucus carota subspecies sativus
Marker Type: 
SNP
Publication: 
Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
Relationship: 
There are 6 relationships.
Relationships
The genetic_marker, MK005100 K2544, is adjacent to primer, K2544_X.
The genetic_marker, MK005100 K2544, is adjacent to primer, K2544_Y.
The genetic_marker, MK005100 K2544, is adjacent to primer, K2544_Common.
The genetic_marker, MK005100 K2544, is located in gene, DCAR_002567.
The genetic_marker, MK005100 K2544, is located in gene, LOC108204684.
The marker_locus, K2544, is an instance of genetic_marker, MK005100 K2544.
MapViewer Marker Map Positions: 
Map NameLinkage GroupPositionLocusMapViewer
2016 80592 NG full mapChr127.147K2544MapViewer
2016 Integ NG full mapCH148.506K2544MapViewer
Synonyms: 
  • MK005100
Sequence Coordinates: 
DCARv2_Chr1:30681619..30681683-
View location in JBrowse: 
DCARv2_Chr1:30681619..30681683-
Sequence: 
AAATTCTCATTGTTAAAGTAAATCAAAGTACGGGATTYCAAGGTGTAATT
ATCAACAAGCATATCAGTTGG
Sequences: 
>MK005100_K2544 ID=MK005100_K2544; Name=MK005100 K2544; organism=Daucus carota; type=genetic_marker
AAATTCTCATTGTTAAAGTAAATCAAAGTACGGGATTYCAAGGTGTAATT
ATCAACAAGCATATCAGTTGG
This is the primary representative sequence for this feature.
Sequence Length: 
71
Five Prime Flanking Region: 
AAATTCTCATTGTTAAAGTAAATCAAAGTACGGGATT
Three Prime Flanking Region: 
CAAGGTGTAATTATCAACAAGCATATCAGTTGG
SNP: 
C/T